Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs392775 chr19:49239857 T/A 2.36E-6 114 11.58 53.27 38.13 KM Plot
THYM rs3950949 chr19:43679209 T/C 0.000251 118 37.35 40.3 39.5 KM Plot
THYM rs3956664 chr7:29715111 G/A 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs4000281 chr7:29726287 A/G 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs4000282 chr7:29726528 C/T 3.51E-13 119 38.13 46.27 6 KM Plot
THYM rs4000283 chr7:29726777 A/C 3.51E-13 119 38.13 46.27 6 KM Plot
THYM rs4000284 chr7:29726917 G/A 3.51E-13 119 38.13 46.27 6 KM Plot
THYM rs4006515 chr8:50221995 GTTAC/G 6.06E-10 119 46.43 50.1 26.52 KM Plot
THYM rs402900 chr19:49237253 C/T 2.36E-6 114 11.58 53.27 38.13 KM Plot
THYM rs4065213 chr1:227410885 AAGG/A 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs4110159 chr7:29712441 A/G 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs4129246 chr4:126081446 G/A 4.34E-5 119 38.13 31.35 48 KM Plot
THYM rs41327646 chr4:185467354 G/T 0.000304 119 41.77 33.1 NA KM Plot
THYM rs4144806 chr2:30775151 T/G 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs4176 chr6:3269894 C/CAG 0 118 4.13 45.87 38.23 KM Plot